Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs2241401 chr19:16241000 G/A 9.83E-5 108 16.2 7.13 0 KM Plot
LAML rs2275249 chr1:146759320 C/G 8.17E-5 111 0 8.6 16.2 KM Plot
LAML rs2276850 chr3:48669648 G/A 0.000106 111 15.73 11.68 0 KM Plot
LAML rs2286279 chr2:242295521 A/C 6.5E-5 111 1.53 16.17 16.77 KM Plot
LAML rs2310997 chr3:48678011 G/C 0.000106 111 15.73 11.68 0 KM Plot
LAML rs2311050 chr1:9334328 C/T 1.14E-5 107 16.17 13.1 3 KM Plot
LAML rs2325838 chr2:238386515 C/A 0.000127 109 12.65 21.32 0 KM Plot
LAML rs2326567 chr6:127606160 G/A 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs238798 chr17:39373159 C/T 0.000172 110 0 21.27 13.15 KM Plot
LAML rs238828 chr17:39307576 C/G 0.000165 110 13.1 20.25 0 KM Plot
LAML rs238830 chr17:39305820 C/T 0.000165 110 13.1 20.25 0 KM Plot
LAML rs2446061 chr11:93149277 C/T 5.23E-5 111 6.13 14.13 16.27 KM Plot
LAML rs2478824 chr13:21844144 G/C 1.06E-8 109 16.2 13.1 0 KM Plot
LAML rs2484339 chr13:21844232 G/A 1.06E-8 109 16.2 13.1 0 KM Plot
LAML rs2551891 chr2:118645429 A/G 0.000161 110 1 7.67 16.17 KM Plot